My publications (and corresponding pdf files) should now be listed on HAL. En principe, les publications et les fichiers correspondants sont disponibles sur HAL.
A Maxwell- Bloch model with discrete symmetries for wave propagation in nonlinear crystals : an application to KDP : C. Besse, B Bidegaray-Fesquet, A. Bourgeade, P. Degond, O. Saut, M2AN Math. Model. Numer. Anal., 38(2) :321-344,2004. pdf
Computational modeling of ultrashort powerful laser pulses in an anisotropic crystal, O. Saut, J. Comput. Phys., 197(2) :624-646, 2004. pdf
Une méthode spectrale pour les équations de Maxwell-Bloch bidimensionnelles dans les cristaux non-linéaires, O. Saut, C. R. Acad. Sci. Paris, Ser. I, 340(12) :927–932, 2005.
Numerical methods for the bidimensional Maxwell-Bloch equations in nonlinear crystals, A. Bourgeade, O. Saut, J. Comput. Phys., 213(2) :823-843, 2006. pdf
Propagation d'impulsions laser ultracourtes dans un cristal non linéaire, A. Bourgeade, O. Saut, ESAIM Proc, 2007. pdf
Toward a New Laser Induced Hydrodynamic Forward Transfer Process with Femtosecond Lasers, L. Hallo, C. Mézel, A. Bourgeade, O. Saut, Contributions to Plasma Physics (2010).
Modeling the early ionization of dielectrics by ultrashort laser pulses, A. Bourgeade, C. Mézel, O. Saut, Journal of Scientific Computing 44 (2) pp. 170-201 (2010). pdf
A multiscale mathematical model of avascular tumor growth to investigate the therapeutic benefit of anti-invasive agents, B. Ribba, O. Saut, T. Colin, D. Bresch, E. Grenier, J.-P. Boissel, J. Theoret. Biol. 243 (4) pp. 532-41, 2006. pdf
Quelques méthodes de paramètre d'ordre avec applications à la modélisation du processus cancéreux, D. Bresch, T. Colin, E. Grenier, B. Ribba, O. Saut, O. Singh, C. Verdier, ESAIM Proc, 18, 2007. pdf
Modèle mathématique multi-échelle de l'angiogenèse tumorale et application à l'analyse de l'efficacité de traitements anti-angiogéniques., F. Billy, O. Saut, H. Morre-Trouilhet, T. Colin, D. Bresch, B. Ribba, E. Grenier. Bull Cancer 95(NS): 65, 2008.
A viscoelastic model for avascular tumor growth, T. Colin, O. Saut, D. Bresch, E. Grenier, B. Ribba, DCDS, (2009). pdf
A pharmacologically-based multiscale mathematical model of angiogenesis and its use in investigating the efficacy of a new cancer treatment strategy, F. Billy, B. Ribba, O. Saut, H. Morre-Trouilhet, T. Colin, D. Bresch, J.P. Boissel, E. Grenier, J.P. Flandrois, J. Theoret. Biol 260 (4) pp. 545-562 (2009). pdf
Computational modeling of solid tumor growth : the avascular stage, T. Colin, D. Bresch, E. Grenier, B. Ribba, O. Saut, SIAM Journal of Scientific Computing 32 (4) pp. 2321–2344 (2010). pdf
Prediction of the Evolution of Thyroidal Lung Nodules Using a Mathematical Model, T. Colin, A. Iollo, D. Lombardi, O. Saut, ERCIM News 82, Special Issue "Computational Biology" (2010). pdf
Ion flux, trans-membrane potential, and osmotic stabilization : A new electrophysiological dynamic model for Eukaryotic cells Clair Poignard, Aude Silve, Frederic Campion, Lluis Mir, Olivier Saut, and Laurent Schwartz, European Biophysics Journal, vol. 40(3), pp. 235-246, mars 2011. pdf
System Identification in Tumor Growth Modeling Using Semi-empirical Eigenfunctions, T. Colin, A. Iollo, D. Lombardi, O. Saut, Mathematical Models & Methods In Applied Sciences, 22(06):1250003–1, 2012.
Radiothérapie adaptative de sarcomes retroperitoneaux : étude dosimétrique preliminaire, P. Sargos, M. Antoine, O. Saut, B. Henriques de Figueiredo, H. Loizeau, J. Caron, C. Zacharatou, and G. Kantor, Cancer/Radiotherapie, 16 (2012), p. 539.
Modeling of the migration of endothelial cells on bioactive micropatterned polymers., Colin T, Durrieu MC, Joie J, Lei Y, Mammeri Y, Poignard C, Saut O., Math Biosci Eng. 2013 Aug 1;10(4):997-1015. doi: 10.3934/mbe.2013.10.997. pdf
Theoretical investigation of the efficacy of antiangiogenic drugs combined to chemotherapy in xenografted mice., F.Lignet, S. Benzekry, S. Wilson, F. Billy, O. Saut, M. Tod, B. You, A. Adda-Berkane, S. Kassour, M. X. Wei, E. Grenier, B. Ribba. J Theor Biol. 2013 Mar 7;320:86-99. doi: 10.1016/j.jtbi.2012.12.013. pdf
In vivo mathematical modeling of tumor growth from imaging data: soon to come in the future?, Cornelis F, Saut O, Cumsille P, Lombardi D, Iollo A, Palussiere J, Colin T., Diagn Interv Imaging. 2013 Jun;94(6):593-600. doi: 10.1016/j.diii.2013.03.001. Epub 2013 Apr 10. pdf
Recovery of the vascularization of a tumor through an inverse problem formulation, T. Colin, A. Iollo, J.B. Lagaert, O. Saut, Journal of Inverse and Ill-posed Problems. Volume 22, Issue 6, Pages 759–786, 2013.
A Multilayer Grow-or-Go Model for GBM: Effects of Invasive Cells and Anti-Angiogenesis on Growth, O. Saut, JB Lagaert, T. Colin, H. M. Fathallah-Shaykh, Bulletin of Mathematical Biology, 2014 76(9) 2306-2333. pdf
Effects of Anti-Angiogenesis on Glioblastoma Growth and Migration: Model to Clinical Predictions, Elizabeth Scribner, Olivier Saut, Paula Province, Asim Bag, Thierry Colin, Hassan M Fathallah-Shaykh, PLOS One, 9 (2014) pdf.
Modeling of migration and orientation of endothelial cells on micropatterned polymers. A simple model based on classical mechanics approach, J. Joie, Y. Lei, M.-C. Durrieu, T. Colin, C. Poignard, O. Saut, DCDS-B, 20(4), 2015. pdf
Patient specific simulation of tumor growth, response to the treatment and relapse of a lung metastasis: a clinical case, T. Colin, F. Cornelis, J. Jouganous, J. Palussière, O. Saut, Journal of Computational Surgery 2015, 2:1 doi:10.1186/s40244-014-0014-1. pdf
Computational Modelling of Metastasis Development in Renal Cell Carcinoma, Baratchart E, Benzekry S, Bikfalvi A, ColinT, Cooley LS, Pineau R, et al. (2015) . PLoS Comput Biol 11(11): e1004626.doi:10.1371/journal.pcbi.1004626
Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success, Yankeelov, T.E., An, G., Saut, O. et al. Ann Biomed Eng (2016) 44: 2626. doi:10.1007/s10439-016-1691-6.
Spatial Modeling of Tumor Drug Resistance: the case of GIST Liver Metastases, G. Lefebvre, F. Cornelis, P. Cumsille, T. Colin, C. Poignard, O. Saut Math Med Biol first published online March 31, (2016) doi:10.1093/imammb/dqw002. pdf
Computational Trials: Unraveling Motility Phenotypes, Progression Patterns, and Treatment Options for Glioblastoma Multiforme, Fabio Raman, Elizabeth Scribner, Olivier Saut, Cornelia Wenger, Thierry Colin, Hassan M. Fathallah-Shaykh, PLoS ONE 11(1): e0146617. doi: 10.1371/journal.pone.0146617, (2016). pdf.
Precision of manual two-dimensional segmentations of lung and liver metastases and its impact on tumour response assessment using RECIST 1.1, F. Cornelis, M. Martin, O. Saut, X. Buy, M. Kind, J. Palussiere, T. Colin, , European Radiology Experimental, Springer, 2017, 1 (1),
Tumor growth model of ductal carcinoma :from in situ phase to stroma invasion, O. Gallinato, T. Colin, O. Saut, C. Poignard, Journal of Theoretical Biology, Elsevier, 2017, 429, pp.253-266.
Interval between planning and frameless stereotactic radiosurgery for brain metastases : are our margins still accurate?, Charlotte Bronnimann, Aymeri Huchet, Julie Benech-Faure, Caroline Dutriaux, Olivier Saut, Eivind Blais, Olivier Mollier, Renaud Trouette, Véronique Vendrely, Neuro-Oncology Practice, Neuro-Oncology Practice 7 (2), 211-217, 2020.preprint
Machine learning and mechanistic modeling for prediction of metastatic relapse in early-stage breast cancer C Nicolò, C Périer, M Prague, C Bellera, G MacGrogan, O Saut, ... JCO Clinical Cancer Informatics 4, 259-2747, 2020. preprint
Joint state-parameter estimation for tumor growth model, Annabelle Collin, Thibaut Kritter, Clair Poignard, Olivier Saut, SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, In press. preprint
Spatial mechanistic modeling for prediction of the growth of asymptomatic meningioma, A Collin, C Copol, V Pianet, T Colin, H Loiseau, O Saut, B Taton, à paraitre dans Computer Methods and Programs in Biomedicine. preprint
A Model-Strengthened Imaging Biomarker for Survival Prediction in EGFR-Mutated Non-small-cell Lung Carcinoma Patients Treated with Tyrosine Kinase Inhibitors, Collin A, Groza V, Missenard L, Chomy F, Colin T, Palussière J, Saut O., Bull Math Biol. 2021 May 8;83(6):68. doi: 10.1007/s11538-021-00902-7. PMID: 33966172.
Evaluation of four tumour growth models to describe the natural history of meningiomas, Engelhardt J, Montalibet V, Saut O, Loiseau H, Collin A. EBioMedicine. 2023 Aug;94:104697. doi: 10.1016/j.ebiom.2023.104697. Epub 2023 Jul 4. article.
Analyse de textures des cancers pancréatiques avant et après chimioradiothérapie : nouveau paramètre prédictif ?, C Pouypoudat, C Périer, O Saut, E Buscail, C Cassinotto, E Terrebonne, V Vendrely, , Cancer/Radiothérapie, 21, 6-7, 2017.
T2-based MRI Delta-radiomics improve response prediction in soft-tissue sarcomas treated by neoadjuvant chemotherapy, Amandine Crombé, Cynthia Périer, Michèle Kind, Baudouin Denis De Senneville, François Le Loarer, Antoine Italiano, Xavier Buy, Olivier Saut, Journal of Magnetic Resonance Imaging, doi :10.1002/jmri.26589, 2019. preprint
Influence of temporal parameters of DCE-MRI on the quantification of heterogeneity in tumor vascularization, Amandine Crombé, Olivier Saut, Jerome Guigui, Antoine Italiano, Xavier Buy, Michèle Kind, Journal of Magnetic Resonance Imaging, doi :10.1002/jmri.26753, 2019. preprint
High‐grade soft‐tissue sarcomas: Can optimizing dynamic contrast‐enhanced MRI postprocessing improve prognostic radiomics models? A Crombé, D Fadli, X Buy, A Italiano, O Saut, M Kind, Journal of Magnetic Resonance Imaging, 2020.
Radiomics and Machine Learning in Anal Squamous Cell Carcinoma: A New Step for Personalized Medicine? N Giraud, P Sargos, N Leduc, O Saut, T Vuong, V Vendrely, Applied Sciences 10 (6), 1988, 2020.
Systematic Review of Sarcomas Radiomics Studies: Bridging the Gap between Concepts and Clinical Applications? A Crombé, D Fadli, A Italiano, O Saut, X Buy, M Kind, European Journal of Radiology, 109283, 2020.
Intensity harmonization techniques influence radiomics features and radiomics-based predictions in sarcoma patients, A Crombé, M Kind, D Fadli, F Le Loarer, A Italiano, X Buy, O Saut, Scientific Reports 10 (1), 1-13, 2020. preprint
Improved 18-FDG PET/CT diagnosis of multiple myeloma diffuse disease by radiomics analysis. Mesguich C, Hindie E, de Senneville BD, Tlili G, Pinaquy JB, Marit G, Saut O. Nucl Med Commun. 2021 May 17. doi: 10.1097/MNM.0000000000001437. Epub ahead of print. PMID: 34001823 preprint.
MRI-Based Radiomics Input for Prediction of 2-Year Disease Recurrence in Anal Squamous Cell Carcinoma, Nicolas Giraud, Olivier Saut, Thomas Aparicio, Philippe Ronchin, Louis-Arnaud Bazire, Emilie Barbier, Claire Lemanski, Xavier Mirabel, Pierre-Luc Etienne, Astrid Lièvre, Wulfran Cacheux, Ariane Darut-Jouve, Christelle de La Fouchardière, Arnaud Hocquelet, Hervé Trillaud, Thomas Charleux, Gilles Breysacher, Delphine Argo-Leignel, Alexandre Tessier, Nicolas Magné, Meher Ben Abdelghani, Côme Lepage, Véronique Vendrely, Cancers, MDPI, 2021, 13 (2), pp.193. ⟨10.3390/cancers13020193⟩ preprint.
Comparison of MRI-based response criteria and radiomics for the prediction of early response to transarterial radioembolization in patients with hepatocellular carcinoma, Aujay, G., Etchegaray, C., Blanc, J. F., Lapuyade, B., Papadopoulos, P., Pey, M. A., Bordenave, L., Trillaud, H., Saut, O., & Pinaquy, J. B. (2022). Diagnostic and interventional imaging, 103(7-8), 360–366. https://doi.org/10.1016/j.diii.2022.01.009. preprint
Development and external validation of a prediction model for the transition from mild to moderate or severe form of COVID-19, Zysman M, Asselineau J, Saut O, Frison E, Oranger M, Maurac A, Charriot J, Achkir R, Regueme S, Klein E, Bommart S, Bourdin A, Dournes G, Casteigt J, Blum A, Ferretti G, Degano B, Thiébaut R, Chabot F, Berger P, Laurent F, Benlala I. Eur Radiol. 2023 Jul 5. doi: 10.1007/s00330-023-09759-x. preprint.
Some models for the prediction of tumor growth: general framework and applications to metastases in the lung, T. Colin, A. Iollo, D. Lombardi, O. Saut, F. Bonichon, and J. Palussière dans Computational Surgery and Dual Training, M. Garbey, B. L. Bass, S. Berceli, C. Collet, and P. Cerveri, eds., Springer New York, 2014, pp. 289-314. pdf
Reduced Order Methods for modeling and computational reduction, A.Iollo, M.Bergmann, H.Telib, O.Saut, T.Colin, D.Lombardi, CECAM Proceeding of the Workshop: RB, POD and Reduced Order Methods for model and computational reduction: towards real-time computing and visualization?
Evaluating growth and risk of relapse of intracranial tumors, O. Saut, T. Colin, A. Collin, T. Kritter, V. Pianet, C. Poignard, B. Taton, in Computational Systems Biology Approaches in Cancer Research, Inna Kuperstein, Emmanuel Barillot eds, Chapman & Hall/CRC Mathematical and Computational Biology Series, 2019.
T. Colin, F. Cornelis, J. Jouganous, M. Martin, and O. Saut: Patient specific image driven evaluation of the aggressiveness of metastases to the lung, in Medical Image Computing and Computer-Assisted Intervention- MICCAI 2014, Springer, 2014, pp. 553-560.
M. Antoine, P. Sargos, O. Saut, C. Pouypoudat, M. Desjardin, H. Loizeau, G. Kantor: Geometrical Analysis of Organ Motion for Preoperative Helical Tomotherapy of Retroperitoneal Liposarcomas. International Journal of Radiation Oncology, 90(1), S844, 2014.
V Pianet, T Colin, H Loiseau, J Joie, J Lafourcade, G Kantor, A Bigourdan, B Taton, O Saut, Meningiomas invading the major dural sinuses : long term results of attempted radical resection and adjuvant treatment after subtotal resection, Neuro-Oncology, Vol 19, Issue Suppl 3, 2017.
Elizabeth Scribner, Olivier Saut, Thierry Colin and Hassan M. Fathallah-Shaykh, Meningiomas invading the major dural sinuses : long term results of attempted radical resection and adjuvant treatment after subtotal resection, Cancer Research Volume 75, Issue 22 Supplement 2, AACR, 2015.
Logiciels déposés à l'APP.
Cadmos: IDDN.FR.001.220005.000.S.P.2015.000.10600
Muppet: IDDN.FR.001.220007.000.S.P.2015.000.31230 ;
Meta-poumon: IDDN.FR.001.220006.000.S.P.2015.000.31230 ;
Contributions en optique non-linéaire et en modélisation de la croissance tumorale en vue des applications cliniques soutenue le 25 septembre 2012 à Bordeaux.
Étude numérique des non-linéarités d'un cristal par résolution des équations de Maxwell-Bloch soutenue le 16 décembre 2003 à Toulouse.